fix: Run makeglossaries whenever relevant input files change

.gitattributes

@@ -0,0 +1,8 @@
+# Normalize text files to LF in the repo and working tree (matches Overleaf).
+* text=auto eol=lf
+
+# Binary assets: never convert.
+*.png binary
+*.jpg binary
+*.jpeg binary
+*.pdf binary

.gitignore

@@ -21,4 +21,6 @@
 *.lof
 *.lot
 *.lol
-*.pdf
+*.pdf
+*.data.minted
+_minted*/

latexmkrc

@@ -0,0 +1,17 @@
+# Allow minted to call its external highlighter (Overleaf enables this by default).
+$pdflatex = 'pdflatex -shell-escape %O %S';
+
+# Run makeglossaries whenever the glossary/acronym input files change.
+# Overleaf does this automatically; local latexmk (e.g. VS Code LaTeX Workshop) does not.
+add_cus_dep('glo', 'gls', 0, 'run_makeglossaries');
+add_cus_dep('acn', 'acr', 0, 'run_makeglossaries');
+
+sub run_makeglossaries {
+  my ($base_name, $path) = fileparse($_[0]);
+  my @args = ('-d', $path, $base_name);
+  unshift @args, '-q' if $silent;
+  return system('makeglossaries', @args);
+}
+
+push @generated_exts, 'glo', 'gls', 'glg', 'acn', 'acr', 'alg';
+$clean_ext .= ' %R.ist %R.xdy';