From 8af93058df460a61508101f9b6eef567f9193ade Mon Sep 17 00:00:00 2001
From: Payton Bates <paytoncbates@gmail.com>
Date: Sun, 4 Oct 2026 01:54:03 -0400
Subject: [PATCH] fix: Run makeglossaries whenever relevant input files change

---
 .gitattributes |  8 ++++++++
 .gitignore     |  4 +++-
 latexmkrc      | 17 +++++++++++++++++
 3 files changed, 28 insertions(+), 1 deletion(-)
 create mode 100644 .gitattributes
 create mode 100644 latexmkrc

diff --git a/.gitattributes b/.gitattributes
new file mode 100644
index 0000000..e828222
--- /dev/null
+++ b/.gitattributes
@@ -0,0 +1,8 @@
+# Normalize text files to LF in the repo and working tree (matches Overleaf).
+* text=auto eol=lf
+
+# Binary assets: never convert.
+*.png binary
+*.jpg binary
+*.jpeg binary
+*.pdf binary
diff --git a/.gitignore b/.gitignore
index 27d8845..b2450da 100644
--- a/.gitignore
+++ b/.gitignore
@@ -21,4 +21,6 @@
 *.lof
 *.lot
 *.lol
-*.pdf
\ No newline at end of file
+*.pdf
+*.data.minted
+_minted*/
\ No newline at end of file
diff --git a/latexmkrc b/latexmkrc
new file mode 100644
index 0000000..b418105
--- /dev/null
+++ b/latexmkrc
@@ -0,0 +1,17 @@
+# Allow minted to call its external highlighter (Overleaf enables this by default).
+$pdflatex = 'pdflatex -shell-escape %O %S';
+
+# Run makeglossaries whenever the glossary/acronym input files change.
+# Overleaf does this automatically; local latexmk (e.g. VS Code LaTeX Workshop) does not.
+add_cus_dep('glo', 'gls', 0, 'run_makeglossaries');
+add_cus_dep('acn', 'acr', 0, 'run_makeglossaries');
+
+sub run_makeglossaries {
+  my ($base_name, $path) = fileparse($_[0]);
+  my @args = ('-d', $path, $base_name);
+  unshift @args, '-q' if $silent;
+  return system('makeglossaries', @args);
+}
+
+push @generated_exts, 'glo', 'gls', 'glg', 'acn', 'acr', 'alg';
+$clean_ext .= ' %R.ist %R.xdy';